SHINE 2019 Assigned Readings

Resources

Reading Assignment

Aerospace

Professor Luhar

SHINE Students: Jacklyn and Noah

• Intertidal Sea Stars alter Body Shape in response to Wave Action

  Authors: Hayne and Palmer Download

• Aerodynamics of Race Cars

  Author: Katz Download

Professor Spedding

SHINE Students: Luke and Tianhao

• Enabling Biomimetic Morphing UAVS

  Authors: Hanna, Spedding, Kornbluh, Kirkwood, West, and Kudav Download

• The Aerodynamics of Flight

  Author: Spedding (Gives a good overview of aerodynamic principles) Download

• Technical Aspect of Microscale Flight Systems

  Authors: Spedding and Lissaman Download

Professor Uranga

Shine Students: Achintya and Katelyn

• Electrified Aircraft

  Authors: Kruger, Byahut, Uranga, Dowdle, Gonzalez, and Hall Download

Professor Uranga

Shine Students: Marco

• Beginner's Guide to Aerodynamics

  Visit

• Beginner's Guide to Wind Tunnels

  Visit

• Effect of Endplates on Two-Dimensional Airfoil Testing at Low Reynolds Number

  Authors: Pelletier and Mueller Visit

Biomedical

Professor Chung

SHINE Student: Jiwoo

• In vivo biodistribution and clearance of peptide amphiphile micelles

  Authors: Chung, Mlinar, Sugimoto, Nord, Roman, and Tirrell Download

• Recent advances in chitosan-based nanoparticles for oral delivery of macromolecules

  Authors: Chen, Mi, Liao, Hsiao, Sonaje, Chung, Hsu and Sung Download

• Peptide and Antibody Ligands for Renal Targeting: Nanomedicine Strategies for Kidney Disease

  Authors: Chung, Masehi-Lano, and Wang Download

Professor Chung

SHINE Student: Jaya

• In vivo biodistribution and clearance of peptide amphiphile micelles

  Authors: Chung, Mlinar, Sugimoto, Nord, Roman, and Tirrell Download

• From Vulnerable Plaque to Vulnerable Patient

  Download

Professor McCain

SHINE Student: Jennifer

• The History and Scope of Tissue Engineering

  Authors: Vacanti and Vacanti Download

• The Challenge of Imitating Nature

  Author: Nerem Download

• Surface-patterned electrode bioreactor for electrical stimulation

  Authors: Tandon, Marsano, Maidhof, Numata, Montouri-Sorrentino, Cannizzaro, Voldman, Vunjak-Novakovic Download

• Microfluidic heart on a chip for higher throughput pharmacological studies

  Authors: Agarwal, Goss, Cho, McCain, Parker Download

Professor McCain

SHINE Students: Jaylene

• Prolonged Culture of Aligned Skeletal Myotubes on Micromolded Gelatin Hydrogels

  Authors: Bettadapur, Suh, Geisse, Wang, Hua, Huber, Viscio, Kim, Strickland, and McCain Download

• Development and application of human skeletal muscle microphysiological systems

  Author: Truskey Download

Professor Shen

SHINE Student: Jingyu

• A Microdevice Platform Recapitulating Hypoxic Tumor Microenvironments

  Authors: Ando, Ta, Yen, Lee, Raola, Shen Download

• Cell-laden microengineered gelatin methacrylate hydrogels

  Authors: Nichol, Koshy, Bae, Hwang, Yamanlar and Khademhosseini Download

Professor Zavaleta

SHINE Student: Nova

• Multiplexed imaging of surface enhanced Roman scattering nanotags in living mice using noninvasive Raman spectroscopy

  Authors: Zavaleta, Smith, Walton, Doering, Davis, Shojael, Natan and Gambhir Download

• Raman's "Effect" on Molecular Imaging

  Authors: Zavaleta, Kircher, Gambhir Download

• Noninvasive molecular imaging of small living subjects using Raman spectroscopy

  Authors: Zavaleta, Cheng, Zerda, Gheysens, Gambhir Download

Professor Zavaleta

SHINE Student: Samuel

• Intravital imaging by simultaneous label-free autofluorescence-multiharmonic microscopy

  Authors: You, Tu, Chaney, Sun, Zhao, Bower, Liu, Marjanovic, Sinha, Pu and Boppart Download

• Characterization and application of porous gold nanoparticles as 2-photon luminescence imaging agents: 20-fold brighter than gold nanorods

  Authors: Zavaleta, Kircher, Gambhir Download

Chemical

Professor Graham

SHINE Student: Jehyeok

• Metabolomics and Isotope Tracing

  Authors: Jang, Chen and Rabinowitz Download

• Tracing insights into human metabolism using chemical engineering approaches

  Authors: Cordes and Metallo Download

• Reverse engineering the cancer metabolic network using flux analysis to understand drivers of human disease

  Authors: Badur and Metallo Download

Professor Graham

SHINE Student: Alejandra

• Four Key Steps Control Glycolytic Flux in Mammalian Cells

  Authors: Tanner, Goglia, Wei, White, Toettcher, Rabinowitz Download

• Tracing insights into human metabolism using chemical engineering approaches

  Authors: Cordes and Metallo Download

• Reverse engineering the cancer metabolic network using flux analysis to understand drivers of human disease (1)

  Authors: Badur and Metallo Download

Professor Lee

SHINE Student: Daniel

• The interaction of photo-responsive surfactants with biological macromolecules

  Author: Mazwi Visit

• Insulin Project Description

  Download

• Protein

  Visit

• Surfactant

  Visit

• Insulin

  Visit

Professor Roberts

SHINE Students: Sarah and Alexandra

• RNA-peptide fusions for the in vitro selection of peptides and proteins

  Authors: Roberts and Szostak Download

• mRNA display: ligand discovery, interaction analysis and beyond

  Authors: Takahashi, Austin and Roberts Download

• RasIns: Genetically Encoded Intrabodies of Activated Ras Proteins

  Authors: Cetin, Evenson, Gross, Jalali-Yazdi, Krieger, Takahashi, Arnold and Roberts Download

Civil

Professor Becerik-Gerber

SHINE Students: Ameyalli and Saul

• A virtual reality based study of indoorfire evacuation after active or passivespatial exploration

  Authors: Cao, Lin, and Li Download

• Building safety and human behaviour in fire: A literature review

  Authors: Kobes, Helsloot, Vries, and Post Download

• The effects of information and hazard on evacuee behavior in virtual reality

  Authors: Tucker, Marsh, Gifford, Lu, Luh, and Astur Download

Computer Science

Professor Luo

SHINE Students: Justin and Alec

• The Context-Tree Weighting Method: Basic Properties

  Authors: Willems, Shtarkov, Tjalkens Download

• How to Use Expert Advice

  Authors: Cesa-Bianchi, Freund, Haussler, Helmbold, Schapire, Warmuth Download

• Predicting Nearly As Well As the Best Pruning of a Decision Tree

  Authors: Helmbold and Schapire Download

Electrical

Professor El-Damak

SHINE Student: Arnav

• Design, Modeling, and Fabrication of Chemical Vapor Deposition Grown MoS2 Circuits with E‑Mode FETs for Large-Area Electronics

  Authors: Yu, El-Damak, Radhakrishna, Ling, Zubair, Lin, Zhang, Chuang, Lee, Antoniadis, Kong, Chandrakasan and Palacios Download

• CMOS Digital Integrated Circuits: Analysis and Design

  Authors: Kang and Leblebici Download

Professor Kapadia

SHINE Students: Abhinav

• Mimicking Biological Synaptic Functionality with an Indium Phosphide Synaptic Device on Silicon for Scalable Neuromorphic Computing

  Authors: Sarkar, Tao, Wang, Lin, Yeung, Ren, Kapadia Download

• Li-Ion Synaptic Transistor for Low Power Analog Computing

  Authors: Fuller, Gabaly, Leonard, Agarwal, Plimpton, Jacobs-Gedrim, James, Marinella, Talin Download

• A non-volatile organic electrochemical device as a low-voltage artificial synapse for neuromorphic computing

  Authors: Burgt, Lubberman, Fuller, Keene, Faria, Agarwal, Marinella, Talin, Salleo Download

Professor Monge

SHINE Students: Jordan and Dhruv

• Localization of microscale devices in vivo using addressable transmitters operated as magnetic spins

  Authors: Monge, Lee-Gosselin, Shapiro, Emami Download

• A Fully Intraocular High-Density Self-Calibrating Epiretinal Prosthesis

  Authors: Monge, Raj, Nazari, Chang, Zhao, Weiland, Humayan, Tai, Emami Download

Professor Nuzzo

SHINE Students: Rayan

• EPIC: Ending Piracy of Integrated Circuits

  Author: Roy, Koushanfar and Markov Download

Professor Nuzzo

SHINE Students: Pratham and Jason

• A Contract-Based Methodology for Aircraft Electric Power System Design

  Author: Nuzzo, Xu, Ozay, Finn, Sangiovanni-Vincentelli, Murray, Donze, Seshia Download

• Optimizing Assume-Guarantee Contracts for Cyber-Physical System Design

  Author: Oh, Kang, Shiraishi, Nuzzo Download

• Compositional Verification for Autonomous Systems with Deep Learning Components

  Authors: Pasareanu, Gopinath, and Yu Download

Professor Sideris

SHINE Students: Matthew

• NIPS 2016 Tutorial: Generative Adversarial Networks

  Author: Goodfellow Download

• Generative Adversarial Nets

  Authors: Goodfellow, Puget-Abadie, Mirza, Xu, Warde-Farley, Ozair, Courville, and Bengio Download

• Generative Model for the Inverse Design of Metasurfaces

  Authors: Liu, Zhu, Rodrigues, Lee, and Cai Download

• A Beginner's Guide to Generative Adversarial Networks (GANs)

  Visit

Professor Wang

SHINE Student: Michael

• Black phosphorus field-effect transistors

  Author: Li, Yu, Ye, Ge, Ou, Wu, Feng, Chen, and Zhang Download

• Two-dimensional material nanophotonics

  Authors: Xia, Wang, Xiao, Dubey and Ramasubramaniam Download

Environmental

Professor Childress

SHINE Student: Pearson

• Wetting phenomena in membrane distillation: Mechanisms, reversal, and prevention

  Authors: Rezaei, Warsinger, Lienhard, Duke, Matsuura, and Samhaber Download

• Membrane distillation at the water-energy nexus: limits, opportunities, and challenges

  Authors: Deshmukh, Boo, Karanikola, Lin, Straub, Tong, Warsinger, and Elimelech Download

• Disinfection by-product formation during seawater desalination: A review

  Authors: Kim, Amy, Karanfil Download

Professor McCurry

SHINE Student: Andrew

• Support Morphology-Dependent Catalytic Activity of Pd/CeO2 for Formaldehyde Oxidation

  Authors: Tan, Wang, Yu, and Zhou Download

• On the Role of Oxygen in the Liquid-Phase Aerobic Oxidation of Alcohols on Palladium

  Authors: Keresszegi, Burgi, Mallet, Baiker Download

• Enhanced Perfluorooctanoic Acid Degradation by Electrochemical Activation of Sulfate Solution on B/N Codoped Diamond

  Authors: Liu, Fan, Quan, Fan, Chen, and Zhao Download

Professor McCurry

SHINE Student: Max,

• Halonitroalkanes, Halonitriles, Haloamides, and N-Nitrosamines: A Critical Review of Nitrogenous Disinfection Byproduct Formation Pathways

  Authors: Shah and Mitch Download

• Halonitromethane Drinking Water Disinfection Byproducts: Chemical Characterization and Mammalian Cell Cytotoxicity and Genotoxicity

  Authors: Plewa, Wagner, and Jazwierska Download

• Occurrence of a New Generation of Disinfection Byproducts

  Authors: Krasner, Weinberg, Richardson, Pastor, Chinn, Sclimenti, Onstad, and Thruston Download

Professor McCurry

SHINE Student: Angel

• The Chlorine Dilemma

  Authors: Sedlak and Gunten Download

• Toxic Impact of Bromide and Iodide on Drinking Water Disinfected with Chlorine or Chloramines

  Authors: Yang, Komaki, Kimura, Hu, Wagner, Marinas, and Plewa Download

Professor Smith

SHINE Student: Sarah

• Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review

  Authors: Rizzo, Manaia, Merlin, Schwartz, Dagot, Ploy, Michael, Fatta-Kassinos Download

• Elucidating microbial community adaptation to anaerobic co-digestion of fats, oils, and grease and food waste

  Authors: Amha, Sinha, Lagman, Gregori and Smith Download

• Microbial management of anaerobic digestion: exploiting the microbiome-functionality nexus

  Authors: Carballa, Regueiro, and Lema Download

Material Science

Robotics

Professor Culbertson

SHINE Student: Rachel

• Haptics: The Present and Future of Artificial Touch Sensations

  Authors: Culbertson, Schorr, and Okamura Download

• Wearable Haptic Pneumatic Device for Creating the Illusion of Lateral Motion on the Arm

  Authors: Wu and Culbertson Download

Professor Mataric'

SHINE Students: Ipek, Mena, Cassandra, Junzhe, Ishaan, and Riya

• Defining Socially Assistive Robotics

  Authors: Feil-Seifer and Mataric Download

• Embodiment in Socially Interactive Robots

  Author: Deng, Mutlu, and Mataric Download

Professor Valero-Cuevas

SHINE Student: Bryant and Irie

• Mechanics of Bipedal Locomotion

  Author: Alexander Download

• A Physical Model Suggests That Hip-Localized Balance Sense in Birds Improves State Estimation in Perching: Implications for Bipedal Robots

  Authors: Urbina-Melendez, Jalaleddini, Daley, Valero-Cuevas Download

• Autonomous functional movements in a tendon-driven limb via limited experience

  Authors: Marjaninejad, Urbina-Melendez, Cohn, Valero-Cuevas Download